1.        Figure 13.34(1)  Differential Retinotectal Adhesion Is Guided by Gradients
of Eph Receptors and their Ligands see MBoC pg 1232- Fig 21-100,21-102, 21-98

2.        Figure 13.33  Differential Repulsion of Temporal Retinal Ganglion
Axons on Tectal Membranes

3.        PATTERN GENERATION P.444
Specificity unfolds in three steps:
1. Pathway selection –axons travel along a route that leads them to an organ
Growth cone effects due to adhesion or repulsion with retraction-laminin, semaphorin, Ephrin In retina. cells near each other send growth cones in a group to optic nerve tract in choroid fissure and are held together by NCAMs, cross or not but migrate to tectum
2.                Target selection after reaching target- recognize a new target of a set of cells with which to make stable connections.
                Neurotrophins like NGF attract sensory neurons
                Optic nerves now find no laminin, encounter ephrin

3. Address selection- axon binds to one or a small subset of targets
Forming the synapse-neuromuscular with laminin and N-cadherin. After formed,
prevent others. Then Schwann cells ensheath axon.
Neurotrophic factors are necessary to keep the cells alive-NGF for sensory and sympathetic

4.        Axon guidance

5.        Figure 13.28(1)  Differentiation of a Motor Neuron Synapse with a Muscle see pg 1109 MBoC agrin

6.        Figure 13.28(2)  Differentiation of a Motor Neuron Synapse with a Muscle

7.        Figure 13.28(3)  Differentiation of a Motor Neuron Synapse with a Muscle

8.        Figure 13.5(3)  Segmental Restriction of Neural Crest Cells and Motor Neurons by the Ephrin Proteins of the Sclerotome

9.        Structure of a gene
Control proteins made from other genes can bind in this
control region and either activate or repress the gene

10.     Structure of a gene

11.     Special proteins can bind to DNA if it is not tightly wound into a condensed chromosome.
Once proteins bind to the DNA they distort it and form loops.
This either enables the RNA polymerase to start making RNA along the DNA or it inhibits it.

12.     Fig 6-16 General transcription factors

13.     Energy requirements

14.     Fig 6-19 transcription activators

15.     enhancers

16.     7-57 activators modify DNA structure

17.     Fig 7-52 gene regulatory proteins localization

18.     Fig 7-53 SEVEN STRIPES OF EVE protein staining with antibodies

19.     7-54 stripe 2 from reporter gene with beta-galactosidase (lacZ)

20.     7-55 Combinatorialncontrol-ACTIVATORS BELOW LINE-found using DNA footprinting

21.     7-56 if giant or kruppel are missing, gene expresion expands

22.     Figure 9.23  Specific Promoter Regions of the even-skipped (eve) Gene Control Specific Transcription Bands in the Embryo

23.     Figure 9.24(1)  Hypothesis for the formation of the Second Stripe of Transcription
from the
even-skipped Gene

24.     Fly gene control

25.     Examples of levels

26.     Levels of pattern

27.     Figure 9.26(1)  Model for the Transcription of the Segment Polarity Genes
engrailed and wingless (wg)

28.     Figure 9.26(2)  Model for the Transcription of the Segment Polarity Genes
engrailed (en) and wingless (wg)

29.     Figure 9.26(3)  Model for the Transcription of the Segment Polarity Genes
engrailed (en) and wingless (wg)

30.     Homeotic genes

31.     21-45

32.     21-46 reporter genes for HOX

33.     Human gene control

34.     7-59 BETA-GLOBIN GENE CONTROL- Gata only in RBC and may prevent binding of other proteins.

35.     Globin family Fig 7-60

36.     CRYSTALLINS EVOLVED DIFFERENT CONTROL MECHANISMS

37.     Once gene regulatory proteins are bound to the DNA,
they recruit remodeling complexes,
histone modifying enzymes,
general TF and RNA polymerase to the promoter

38.     Figure 47.21  Experimental demonstration of the importance of cytoplasmic determinants in amphibians

39.     Fig 21-66

40.     Fig 21-71

41.     21-72 setting dorsal-ventral

42.     21-72

43.     Figure 10.26  Events Hypothesized to Bring about the Induction of the
Organizer in the Dorsal Mesoderm

44.     Figure 10.22(2)  Summary of Experiments by Nieuwkoop and by Nakamura and Takasaki, Showing Mesodermal Induction by Vegetal Endoderm

45.     Figure 10.25(1)  Model of the Mechanism by which the Disheveled Protein Stabilizes
b-catenin in the Dorsal Portion of the Amphibian Egg

46.     Figure 10.25(2)  Model of the Mechanism by which the Disheveled Protein Stabilizes
b-catenin in the Dorsal Portion of the Amphibian Egg

47.     Figure 10.27  Mesoderm Induction and Organizer Formation by the Interaction of
 b-catenin And TGF-b Proteins

48.     Expression of patterning genes in frog

49.     Postranslational modification can alter activity, diffusion rate, assembly

50.     Left-right asymmetry see Fig 21-82

51.     Fig 21-32Toll allows dorsal protein to go into ventral nuclei where it turns on twist so cells become mesoderm in flies

52.     7-98 Localization of RNA

53.     7-99 3UTR OF MRNA HAS ZIP CODE FOR LOCALIZATION

54.     FACTORS INVOLVED IN SETTING AXES IN FROG

55.     Wnt- frizzeled